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Publications

Last modified: August 1, 2017
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2016

  • [C] "The National Library of Medicine Pill Image Recognition Challenge: An Initial Report", Z. Yaniv, J. Faruque, S. Howe, A. Bond, P. Perillan, K. Dunn, D. Sharlip, O. Bodenreider, M. J. Ackerman, T. S. Yoo, IEEE Applied Imagery Pattern Recognition Workshop (AIPR), 2016. [ pdf, Bibref].
  • [M] "Image-Guided Interventions We’ve come a long way, but are we there?", C. A. Linte and Z. Yaniv, IEEE Pulse, 7(6), pp. 46-50 2016. [pdf, Bibref].
  • [C] "Cost-Effective Surgical Registration Using Consumer Depth Cameras", M. Potter and Z. Yaniv, SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling, 2016. [ preprint pdf, Bibref].

2015

  • [BC] "Registration for Orthopaedic Interventions", Z. Yaniv, in Computational Radiology for Orthopaedic Interventions, ch. 3, Springer, 2015 [pdf preprint, Bibref].
  • [BC] "Applications of Augmented Reality in the Operating Room", Z. Yaniv, C. A. Linte, in Fundamentals of Wearable Computers and Augmented Reality, Second Edition, ch. 19, CRC Press, 2015 [pdf preprint, Bibref].
  • [M] "If We Can See It, We Can Fix It: From Medical Imaging to Guidance Environments for Computer-Assisted Interventions", C. A. Linte, Z. Yaniv, IEEE lifesciences newsletter.
  • [C] "Which Pivot Calibration?", Z. Yaniv, SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling, 2015. [pdf, Bibref].

2014

  • [C] "A Framework for Semi-automatic Fiducial Localization in Volumetric Images", D. Nagy, T. Haidegger, Z. Yaniv, 9th International Workshop on Augmented Environments for Computer-Assisted Interventions (AE-CAI), 2014. [pdf, Bibref].
  • [C] "Source Code Control Workflows for Open Source Software", K. A. Gary, Z. Yaniv, Ö. Güler, K. Cleary, A. Enquoharie, 13'th International Conference on Software Engineering Research and Practice (SERP'14), 2014. [pdf, Bibref].
  • [J] "When change happens: computer assistance and image guidance for minimally invasive therapy", C. A. Linte, Z. Yaniv, Healthcare Technology Letters, 1(1), pp. 2-5, 2014. [pdf, Bibref].
  • [J] "Treatment Planning and Image Guidance for Radiofrequency Ablation of Large Tumors", H. Ren, E. Campos-Nanez, Z. Yaniv, F. Banovac, H. Abeledo, N. Hata, K. Cleary, IEEE J. Biomed. Health Inform.,18(3),pp. 920-928, 2014. [pdf, Bibref].
  • [C] "A Cost Effective and High Fidelity Fluoroscopy Simulator using the Image-Guided Surgery Toolkit (IGSTK)", R. Gong, B. Jenkins, R. Sze, Z. Yaniv, SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling, 2014. [pdf, Bibref]. A video showing the system in action is available here.
  • [BC] "A tutorial on Image-Guided Therapy", Ö. Güler, Z. Yaniv, in Applied Medical Image Processing, Second Edition, ch. 11, CRC Press, 2014 [Bibref]. The latest version of the software accompanying this chapter is freely available here.

2013

  • [J] "Interactive Initialization of 2D/3D Rigid Registration", R. H. Gong, Ö. Güler, M. Kürklüoglu, J. Lovejoy, Z. Yaniv, Med. Phys., 20(12), pp. 121911, 2013. [pdf, Bibref].
  • [C] "Towards A Clinical Stereoscopic Augmented Reality System for Laparoscopic Surgery", X. Kang, J. Oh, E. Wilson, Z. Yaniv, T. Kane, C. Peters, R. Shekhar, 2'nd International Workshop on Clinical Image-Based Procedures, From Planning to Intervention, 2013 (Best Paper). [pdf, Bibref].
  • [C] "An Augmented Reality Approach for Initializing 2D/3D Registration", R. Gong, Ö. Güler, J. Lovejoy, Z. Yaniv, 6th International Workshop on Medical Imaging and Augmented Reality, 2013. [pdf, Bibref].
  • [C] "Interactive initialization for 2D/3D intra-operative registration using the Microsoft Kinect", R. Gong, Ö. Güler, Z. Yaniv, SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling, 2013. [pdf, Bibref].
  • [C] "A framework for automatic tuning of system parameters and its use in image registration", R. Gong, Z. Yaniv, SPIE Medical Imaging: Image Processing, 2013. [pdf, Bibref].

2012

  • [T] "Document Object Model based XML Handling in ITK", R. H. Gong, Z. Yaniv, Insight Journal, January-December, 2012. [pdf, Bibref].
  • [C] "Image-Guided Navigation: A Cost Effective Practical Introduction using the Image-Guided Surgery Toolkit (IGSTK)", Ö. Güler, Z. Yaniv, Proceedings of the 34th Annual International Conference of the IEEE EMBS, 2012. [pdf, Bibref].
  • [M] "Image-Guided Interventions Tutorial with IGSTK", Ö. Güler, Z. Yaniv, Kitware's The Source, Software Developers Quarterly, July 2012. [pdf, Bibref].

2011

  • [J] "Agile methods for open source safety-critical software", K. Gary, A. Enquobahrie, L. Ibanez, P. Cheng, Z. Yaniv, K. Cleary, S. Kokoori, B. Muffih, J. Heidenreich, Softw. Pract. Exper., 41(9), pp. 945-962, 2011. [pdf, Bibref].
  • [C] "Online Temporal Synchronization of Pose and Endoscopic Video Streams", O. Guler, Z. Yaniv, W. Freysinger, SPIE Medical Imaging: Image Processing, 2011 [pdf, Bibref].
  • [C] "Ultrasound calibration framework for the image-guided surgery toolkit (IGSTK)", Z. Yaniv, P. Foroughi, H.-J. Kang, E. Boctor, SPIE Medical Imaging: Image Processing, 2011 [pdf, Bibref].

2010

  • [T] "Random Sample Consensus (RANSAC) Algorithm, A Generic Implementation", Z. Yaniv, Insight Journal, July-December 2010. [pdf, Bibref]. Source code and the paper are freely available from here.
  • [J] "Evaluation of Spherical Fiducial Localization in C-arm Cone-Beam CT using Patient Data", Z. Yaniv, Med. Phys., 37(10), pp. 5298-5305, 2010. [pdf, Bibref]. Source code for the algorithms described in this paper is available here.
  • [C] "Evaluation of a 4D cone-beam CT reconstruction approach using an anthropomorphic phantom", Z. Yaniv, J. Boese, M. Sarmiento, and K. Cleary, in Information Processing in Computer-Assisted Interventions (IPCAI), 2010 [pdf, Bibref].
  • [J] "Needle-based interventions with the image-guided surgery toolkit (IGSTK): From phantoms to clinical trials, Z. Yaniv, P.Cheng, E. Wilson, T. Popa, D. Lindisch, E. Campos-Nanez, H. Abeledo, V. Watson, K. Cleary, and F. Banovac,IEEE Trans. Biomed. Eng., 57(4), pp. 922-933, 2010 [pdf, Bibref].
  • [C] "Quantitative CT for volumetric analysis of medical images: Initial results for liver tumors", A. S. Behnaz, J. Snider, C. Eneh, G. Esposito, E. Wilson, Z. Yaniv, E. Cohen, K. Cleary, SPIE Medical Imaging: Image Processing, 2010 [pdf, Bibref].

2009

  • [J] "OpenIGTLink: An Open Network Protocol for Image-Guided Therapy Environment", J. Tokuda, G. S. Fischer, X. Papademetris, Z. Yaniv et al., The International Journal of Medical Robotics and Computer Assisted Surgery, 5(4), pp. 423-434, 2009 [pdf, Bibref].
  • [J] "Localizing spherical fiducials in C-arm based cone-beam CT", Z. Yaniv, Med. Phys., Vol. 36(11), pp. 4957-4966, 2009 [pdf, Bibref]. Source code for the algorithms described in this paper is available here. Sample data sets are available here.
  • [C] "Evaluation of a 4D Cone-Beam CT Reconstruction Approach using a Simulation Framework", A. Hartl, Z. Yaniv, Proceedings of the 31st Annual International Conference of the IEEE EMBS, 2009 [pdf, Bibref].
  • [C] "Temporal calibration of tracking and image acquisition", Oezgur Guler, Z. Yaniv, W. Freysinger, K. Cleary, Int. Conf. on Computer-Assisted Radiology and Surgery, 2009 [pdf, Bibref].
  • [C] "A comparison study of two reconstruction methods for gated Cone-Beam CT", A. Hartl, Z. Yaniv,Int. Conf. on Computer-Assisted Radiology and Surgery, 2009 [pdf, Bibref].
  • [B] "IGSTK: The Book", K. Cleary, P. Cheng, A. Enquobahrie, Z. Yaniv eds., Signature Book Printing, 2009 [pdf, Bibref].
  • [J] "Electromagnetic Tracking in the Clinical Environment", Z. Yaniv, E. Wilson, D. Lindisch, K. Cleary, Med. Phys., Vol. 36(3), pp. 876-892, 2009 [pdf, Bibref].
  • [C] "Interfacing Proprietary Hardware with the Image-Guided Surgery Toolkit (IGSTK): a Case for the OpenIGTLink Protocol", S. Ordas, Z. Yaniv, P. Cheng, J. Tokuda, H. Liu, N. Hata, K. Cleary, SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display, 2009 [pdf, Bibref].
  • [C] "Fiducial localization in C-arm based Cone-Beam CT", Z. Yaniv, SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display, 2009 [pdf, Bibref]. Source code for the algorithms described in this paper is available here.

2008

  • [J] "Designing tracking software for image guided surgery applications: IGSTK experience", A. Enquobahrie, D. Gobbi, M. W. Turek, P. Cheng, Z. Yaniv, F. Lindseth, K. Cleary, International Journal of Computer Assisted Radiology and Surgery, Vol. 3(5), pp. 395-403, 2008 [pdf, Bibref].
  • [T] "IGSTK: Building High Quality Roads with Open Source Software", L. Ibanez, A. Enquobahrie, M. Turek, J. Jomier, R. Avila, P. Cheng, Z. Yaniv, F. Lindseth, K. Gary, K. Cleary, Workshop on Systems and Architecture for Computer Assisted Intervention in conjunction with MICCAI, 2008 [pdf, Bibref].
  • [T] "Electromagnetic Tracking in the Clinical Environment: A Buyer’s Guide", Z. Yaniv, E. Wilson, D. Lindisch, K. Cleary, Technical report, July 2008 [pdf, Bibref].
  • [BC] "Rigid Registration", Z. Yaniv, in Image-Guided Interventions Technology and Applications, ch. 6, Springer-Verlag, 2008 [pdf initial version, Bibref].
  • [C] "Respiratory Signal Generation for Retrospective Gating of Cone-Beam CT Images", S. Wiesner, Z. Yaniv, SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display, 2008 [pdf, Bibref]. Source code for the algorithms described in this paper is available here.
  • [C] "A Buyer’s Guide to Electromagnetic Tracking Systems for Clinical Applications", E. Wilson, Z. Yaniv, D. Lindisch, K. Cleary, SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display, 2008 [pdf, Bibref].
  • [C] "Accuracy Analysis of an Image-Guided System for Vertebroplasty therapy based on Electromagnetic Tracking of Instruments", J. Ding, N. Khan, P. Cheng, E. Wilson, V. Watson, K. Cleary, Z. Yaniv, SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display, 2008 [pdf, Bibref].

2007

  • [T] "The Development of the Image-Guided Surgical Toolkit (IGSTK): An Open Source Package for Medical Interventions", K. Gary, P. Cheng, Z. Yaniv, A. Enquobahrie, L. Ibanez, and K. Cleary, Workshop on Software and Systems for Medical Devices and Services in conjunction with IEEE Real-Time Systems Symposium (RTSS), 2007 [pdf, Bibref].
  • [J] "The Image-Guided Surgery Toolkit IGSTK: An Open Source C++ Software Toolkit", A. Enquobahrie and P. Cheng and K. Gary and L. Ibanez and D. Gobbi and F. Lindseth and Z. Yaniv and S. Aylward and J. Jomier and K. Cleary, Journal of Digital Imaging, Vol. 20(Suppl. 1), pp. 21--33, 2007 (Best Paper - Second Place) [pdf, Bibref].
  • [C] "Monitoring Patient Respiration using a Single Optical Camera", S. Wiesner, Z. Yaniv, Proceedings of the 29th Annual International Conference of the IEEE EMBS, 2007 [pdf, Bibref].
  • [C] "The influence of CT based attenuation correction on PET/CT registration: an evaluation study", Z. Yaniv, K. H. Wong, F. Banovac, E. Levy, K. Cleary, SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display, 2007 [pdf, Bibref].
  • [C] "A hardware and software protocol for the evaluation of electromagnetic tracker accuracy in the clinical environment: a multi-center study", E. Wilson, Z. Yaniv, H. Zhang, C. Nafis, E. Shen, G. Shechter, A. D. Wiles, T. Peters, D. Lindisch, K. Cleary, SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display, 2007 [pdf, Bibref].

2006

  • [C] "Integrated PET/CT Guidance System for Oncologic Interventional Radiology", K. H. Wong, E. Levy, Z. Yaniv, F. Banovac, D. Earl-Graef, K. Cleary, Proceedings of IEEE NSS-MIC 2006. [pdf, Bibref].
  • [T] "Robot Assisted Needle Placement: Developed Using Image Guided Surgery Toolkit (IGSTK)", P. Cheng, A. Enquobahrie, R. Stenzel, R. Lin, H. Zhang, Z. Yaniv, H. Kim, K. Cleary, Open Source Workshop MICCAI 2006. [pdf, Bibref].
  • [T] "Image-Guided Procedures: A Review", Z. Yaniv, K. Cleary, Technical report, April 2006. [pdf, Bibref].
  • [C] "Fluoroscopy based accuracy assessment of electromagnetic tracking", Z. Yaniv, K. Cleary, SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display, 2006 [ pdf, Bibref].
  • [C] "A realistic simulation framework for assessing deformable slice-to-volume (CT-fluoroscopy/CT) registration", Z. Yaniv, R. Stenzel, K. Cleary, F. Banovac, SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display, 2006 [ pdf, Bibref].

2005

  • [J] "Precision targeting of liver lesions using a novel electromagnetic navigation device in physiologic phantom and swine", F. Banovac, J. Tang, S. Xu, D. Lindisch H. Y. Chung, E. B. Levy, T. Chang, M. F. McCullough, Z. Yaniv, B. J. Wood, K. Cleary, Medical Physics, Vol. 32(8), pp. 2698--2705, 2005 [ pdf, Bibref].
  • [J] "Precise Robot-Assisted Guide Positioning for Distal Locking of Intramedullary Nails", Z. Yaniv, L. Joskowicz, IEEE Trans. on Medical Imaging, Vol. 24(5), pp. 624--635, 2005 [ pdf, Bibref].

2004

  • [C] "Robot-assisted Distal Locking of Long Bone Intramedullary Nails: Localization, Registration, and In-Vitro Experiments", Z. Yaniv, L. Joskowicz, Proc. of the 7th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention, 2004. [pdf, Bibref].
  • [T] "Robot-assisted Distal Locking of Long Bone Intramedullary Nails: Localization, Registration, and In-Vitro Experiments", Z. Yaniv, L. Joskowicz, Technical report, April 2004. [pdf, Bibref].
  • [J] "Long Bone Panoramas from Fluoroscopic X-ray Images", Z. Yaniv, L. Joskowicz,IEEE Trans. on Medical Imaging, Vol. 23(1), pp. 26--35, 2004 [ pdf, Bibref].

2003

  • [J] "Gradient-Based 2D/3D Rigid Registration of Fluoroscopic X-ray to CT", H. Livyatan, Z. Yaniv, L. Joskowicz, IEEE Trans. on Medical Imaging, Vol. 22(11), pp. 1395--1406, 2003 [pdf, Bibref].
  • [C] "Anatomical image-based rigid registration between fluoroscopic X-ray and CT: methods and experimental results", L. Joskowicz, D. Knaan, H. Livyatan, Z. Yaniv, A. Khoury, R. Mosheiff, M. Liebergall, Proc. of the 17th Int. Congress on Computer-Assisted Radiology and Surgery, 2003 [pdf, Bibref].
  • [C] "A robot-assisted system for long bone intramedullary distal locking: concept and preliminary results", L. Joskowicz, C. Milgrom, M. Shoham, Z. Yaniv, A. Simkin, Proc. of the 17th Int. Congress on Computer-Assisted Radiology and Surgery, 2003 [pdf, Bibref].

2002

  • [J] "Comparative in-vitro study of contact and image-based rigid registration for computer-aided surgery", O. Sadowsky and Z. Yaniv and L. Joskowicz, Computer Aided Surgery, Vol. 7(4), pp. 223--236, 2002 [pdf, Bibref].
  • [C] "Robust Automatic C-arm Calibration for Fluoroscopy-based Navigation: a Practical Approach", H. Livyatan, Z. Yaniv, L. Joskowicz, Proc. of the 5th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention, 2002 [pdf, Bibref].

2001

  • [C] "Long bone panoramas from fluoroscopic X-ray images", Z. Yaniv, L. Joskowicz, Proc. 15th Int. Congress on Computer Assisted Radiology and Surgery,2001 [pdf, Bibref].

2000

  • [C] "In-Vitro Accuracy Study of Contact and Image-Based Registration: Materials, Methods, and Experimental Results", Z. Yaniv, O. Sadowsky, L. Joskowicz, Proc. of the 14th Int. Congress on Computer Assisted Radiology and Surgery, 2000 [pdf, Bibref].

1999

  • [T] "In-vitro accuracy of contact-based registration: materials, methods, and experimental results", Z. Yaniv, O. Sadowsky, G. Leshem, L. Joskowicz, Technical report, December 1999. [pdf, Bibref].

1998

  • [J] "FRACAS: A System for Computer-Aided Image-Guided Long Bone Fracture Surgery", L. Joskowicz, C. Milgrom, A. Simkin, L. Tockus, Z. Yaniv, Computer Aided Surgery, Vol. 3(6), pp. 271--288, 1998 [pdf, Bibref].
  • [C] "Computer-Aided Image-Guided Bone Fracture Surgery: Concept and Implementation", L. Joskowicz, L. Tockus, Z. Yaniv, A. Simkin, C. Milgrom, Proc. of the 12th Int. Congress on Computer Assisted Radiology and Surgery, 1998 [pdf, Bibref].
  • [T] "Fluoroscopic X-ray Image Processing and Registration for Computer-Aided Orthopedic Surgery", M.Sc thesis, Z. Yaniv, 1998 [pdf, Bibref].
  • [C] "Fluoroscopic Image Processing for Computer-Aided Orthopaedic Surgery", Z. Yaniv, L. Joskowicz, A. Simkin, M. Garza-Jinich, C. Milgrom, Proc. of the 1st Int. Conf. on Medical Computing and Computer-Assisted Intervention, 1998 [pdf, Bibref].