List on Google Scholar.
2023
-
[J] "Combining Radiological and Genomic TB Portals Data for Drug Resistance Analysis",
V. Bui and Z. Yaniv, M. Harris, F. Yang,
K. Kantipudi, D. Hurt, A. Rosenthal, S. Jaeger,
IEEE Access, 11:84228-84240, 2023.
[pdf, Bibref].
@Article{bui2023,
author = {Vy Bui and Ziv Yaniv and Michael Harris and Feng Yang and
Karthik Kantipudi and Darrell Hurt and Alex Rosenthal and Stefan Jaeger},
title = {Combining Radiological and Genomic {TB} Portals Data for Drug Resistance Analysis},
pages = {84228-84240},
volume = {11},
journal = {IEEE Access},
year = {2023},
}
-
[C] "Assessing an AI-based smart imagery framing and truthing (SIFT) system to assist radiologists annotating lung abnormalities on chest x-ray images for development of deep learning models", Lin Guo et al.,
SPIE Medical Imaging: Computer-Aided Diagnosis, 2023.
[pdf, Bibref].
@InProceedings{guo2023,
author = {Lin Guo and Kunlei Hong and Ziqi Zhang and Bin Zheng and Stefan Jaeger and
Jordan Fuhrmane and Hui Lie and Maryellen Gigere and Andrei Gabrielian and
Alex Rosenthal and Darrell E. Hurt and Ziv Yaniv and Y.M. Fleming Lure},
booktitle = {SPIE Medical Imaging: Computer-Aided Diagnosis},
title = {Assessing an {AI}-based smart imagery framing and truthing ({SIFT})
system to assist radiologists annotating lung abnormalities on chest
x-ray images for development of deep learning models},
year = {2023}
}
2022
-
[T] "Common Limitations of Image Processing Metrics: A Picture Story", A. Reinke et al.,
CoRR, 2022.
[pdf, Bibref].
@Article{reinke2022,
author = {Annika Reinke and Minu D. Tizabi and Carole H. Sudre and
Matthias Eisenmann and Tim R{\"{a}}dsch and Michael Baumgartner and
Laura Acion and Michela Antonelli and Tal Arbel and
Spyridon Bakas and Peter Bankhead and Arriel Benis and
M. Jorge Cardoso and Veronika Cheplygina and Beth Cimini and
Gary S. Collins and Keyvan Farahani and Ben Glocker and
Patrick Godau and Fred Hamprecht and Daniel A. Hashimoto and
Doreen Heckmann-N{\"{o}}tzel and Michael M. Hoffmann and Merel Huisman and
Fabian Isensee and Pierre Jannin and Charles E. Kahn and
Alexandros Karargyris and Alan Karthikesalingam and Bernhard Kainz and
Emre Kavur and Hannes Kenngott and Jens Kleesiek and
Thijs Kooi and Michal Kozubek and Anna Kreshuk and
Tahsin Kurc and Bennett A. Landman and Geert Litjens and
Amin Madani and Klaus Maier-Hein and Anne L. Martel and
Peter Mattson and Erik Meijering and Bjoern Menze and
David Moher and Karel G.M. Moons and Henning M{\"{u}}ller and
Felix Nickel and Jens Petersen and Gorkem Polat and
Nasir Rajpoot and Mauricio Reyes and Nicola Rieke and
Michael Riegler and Hassan Rivaz and Julio Saez-Rodriguez and
Clarisa Sanchez Gutierrez and Julien Schroeter and Anindo Saha and
Shravya Shetty and Bram Stieltjes and Ronald M. Summers and
Abdel A. Taha and Sotirios A. Tsaftaris and Bram van Ginneken and
Ga{\"{e}}l Varoquaux and Manuel Wiesenfarth and Ziv R. Yaniv and
Annette Kopp-Schneider and Paul J{\"{a}}ger and Lena Maier-Hein},
title = {Common Limitations of Image Processing Metrics: A Picture Story},
journal = {CoRR},
year = {2022},
volume = {abs/2104.05642},
url = {https://arxiv.org/abs/2104.05642},
}
This is a live document on arxiv with continuous contributions from the community. A relevant SimpleITK Jupypter notebook on segmentation evaluation.
-
[J] "IBEX: an iterative immunolabeling and chemical bleaching method for high-content imaging of diverse tissues",
A. J. Radtke, C. J. Chu, Z. Yaniv, L. Yao, J. Marr, R. T. Beuschel, H. Ichise, A. Gola, J. Kabat,
B. Lowekamp, E. Speranza, J. Croteau, N. Thakur, D. Jonigk, J. Davis, J. M. Hernandez, R. N. Germain,
Nat Protoc, 17(2): 378-401, 2022.
[pdf, Bibref].
@Article{radtke2022,
author = {Andrea J. Radtke and Colin J. Chu and Ziv Yaniv and Li Yao and James Marr and
Rebecca T. Beuschel and Hiroshi Ichise and Anita Gola and Juraj Kabat and
Bradley Lowekamp and Emily Speranza and Joshua Croteau and Nishant Thakur
and Danny Jonigk and Jeremy Davis and Jonathan M. Hernandez and Ronald N. Germain},
title = {{IBEX}: an iterative immunolabeling and chemical bleaching method for high-content imaging of diverse tissues},
journal = {Nat Protoc},
year = {2022},
volume = {17},
number = {2},
pages = {378--401}
}
We made the cover. The source code for the work described in the manuscript is available on GitHub, a video illustrating usage is available on YouTube, sample datasets can be found on zenodo and the results describe in the manuscript are also available on zenodo.
-
[J] "Generalization Challenges in Drug-Resistant Tuberculosis Detection from Chest X-rays",
M. Karki, K. Kantipudi, F. Yang, H. Yu, Y. X. J. Wang, Z. Yaniv, S. Jaeger,
Diagnostics, 12(1), 2022.
[pdf, Bibref].
@Article{karki2022,
author = {Manohar Karki and Karthik Kantipudi and Feng Yang and Hang Yu and
Yi Xiang J Wang and Ziv Yaniv and Stefan Jaeger},
title = {Generalization Challenges in Drug-Resistant Tuberculosis Detection from Chest {X-rays}},
journal = {Diagnostics},
year = {2022},
volume = {12},
number = {1}
}
All of the data used in this work is freely available from the NIAID TB Portals program.
-
[J] "Differentiating between drug-sensitive and drug-resistant tuberculosis with machine learning for clinical and radiological features",
F. Yang, H. Yu, K. Kantipudi, M. Karki, Y. M. Kassim, A. Rosenthal, D. E. Hurt, Z. Yaniv, S. Jaeger,
Quant Imaging Med Surg, 12(1): 675-687 ,2022.
[pdf, Bibref].
@Article{yang2022,
author = {Feng Yang and Hang Yu and Karthik Kantipudi and Manohar Karki and
Yasmin M. Kassim and Alex Rosenthal and Darrell E. Hurt and
Ziv Yaniv and Stefan Jaeger},
title = {Differentiating between drug-sensitive and drug-resistant tuberculosis
with machine learning for clinical and radiological features},
journal = {Quant Imaging Med Surg},
year = {2022},
volume = {12},
number = {1},
pages = {675--687}
}
All of the data used in this work is freely available from the NIAID TB Portals program.
2021
-
[C] "Automated Drug-Resistant TB Screening: Importance of Demographic Features and Radiological Findings in Chest X-Ray", F. Yang, H. Yu, K. Kantipudi, A. Rosenthal, D. E. Hurt, Z. Yaniv, S. Jaeger,
IEEE Applied Imagery Pattern Recognition Workshop (AIPR), 2021.
[pdf, Bibref].
@InProceedings{yang2021,
author = {Feng Yang and Hang Yu and Karthik Kantipudi and
Alex Rosenthal and Darrell E. Hurt and Ziv Yaniv and Stefan Jaeger},
title = {Automated Drug-Resistant {TB} Screening: Importance of Demographic Features and
Radiological Findings in Chest {X}-Ray},
booktitle = {{IEEE} Applied Imagery Pattern Recognition Workshop ({AIPR})},
year = {2021},
}
All of the data used in this work is freely available from the NIAID TB Portals program.
-
[C] "Identifying Drug-Resistant Tuberculosis in Chest Radiographs: Evaluation of CNN
Architectures and Training Strategies", M. Karki, K. Kantipudi, H. Yu, F. Yang, Y. M. Kassim, Z. Yaniv, S. Jaeger,
Proceedings of the 43rd Annual International Conference of the IEEE EMBS, 2021.
[pdf, Bibref].
@InProceedings{karki2021,
author = {Manohar Karki and Karthik Kantipudi and Hang Yu and Feng Yang
and Yasmin M. Kassim and Ziv Yaniv and Stefan Jaeger},
title = {Identifying Drug-Resistant Tuberculosis in Chest Radiographs:
Evaluation of {CNN} Architectures and Training Strategies},
booktitle = {International Conference of the IEEE Engineering in Medicine and Biology Society {(EMBC)}},
year = {2021},
pages = {2964--2967}
}
All of the data used in this work is freely available from the NIAID TB Portals program.
-
[J] "Dual-view light-sheet imaging through tilted glass interface using a deformable mirror ",
N. Vladimirov, F Preusser, J. Wisniewski, Z. Yaniv, R. Desai, A. Woehler, S. Preibisch,
Biomedical Optics Express, 12(4): 2186-2203 ,2021.
[pdf, Bibref].
@Article{vladimirov2021,
author = {Nikita Vladimirov and Friedrich Preusser and Jan Wisniewski and
Ziv Yaniv and Ravi Anand Desai, and Andrew Woehler and Stephan Preibisch},
title = {Dual-view light-sheet imaging through tilted glass interface using a deformable mirror},
journal = {Biomedical Optics Express},
year = {2021},
volume = {12},
number = {4},
pages = {2186--2203},
}
The source code and custom hardware designs for the work described in the manuscript is available on GitHub.
-
[J] "PD-1
blockade exacerbates mycobacterium tuberculosis infection in rhesus
macaques", K. D. Kauffman, S. Sakai, N. E. Lora, S. Namasivayam, P. J. Baker,
O. Kamenyeva, T. W. Foreman, C. E. Nelson, D. O. de Souza, C.L. Vinhaes,
Z. Yaniv, C. S. L. Arleham, A. Sette, G. J. Freeman, R. Moore, A. Sher, K. D.
Mayer-Barber, B. B. Andrade, J. Kabat, L. E. Via, and D. L. Barber,Science Immunology, 6(55), 2021.
[pdf, Bibref].
@Article{kauffman2021,
author = {Keith D. Kauffman and Shunsuke Sakai and Nickiana E. Lora and Sivaranjani Namasivayam and
Paul J. Baker and Olena Kamenyeva and Taylor W. Foreman and Christine E. Nelson and
Deivide Oliveira-de-Souza and Caian L. Vinhaes and Ziv Yaniv and Cecilia S. Lindestam Arleham
and Alessandro Sette and Gordon J. Freeman and Rashida Moore and Alan Sher and Katrin D Mayer-Barber
and Bruno B. Andrade and Juraj Kabat and Laura E. Via and Daniel L. Barber},
title = {{PD-1} blockade exacerbates Mycobacterium tuberculosis infection in rhesus macaques},
journal = {Science Immunology},
year = {2021},
volume = {6},
number = {55},
}
2020
-
[J] "IBEX: A versatile multiplex optical imaging approach for deep phenotyping and spatial analysis of cells in complex tissues",
A. J. Radtke, E. Kandov, B. Lowekamp, E. Speranza, C. J. Chu, A. Gola, N. Thakur,
R. Shih, L. Yao, Z. R. Yaniv, R. T. Beuschel, J. Kabat, J. Croteau, J. Davis,
J. M. Hernandez, R. N. Germain,
Proc. Natl. Acad. Sci. USA, 117(52): 33455-33465, 2020.
[pdf, Bibref].
The source code for the image registration described in the manuscript is available on GitHub
and a sample dataset can be found on zenodo.
@Article{radtke2020,
author = {Andrea J. Radtke and Evelyn Kandov and Bradley Lowekamp and Emily Speranza and Colin J. Chu and Anita Gola and Nishant Thakur
and Rochelle Shih and Li Yao and Ziv Rafael Yaniv and Rebecca T. Beuschel and Juraj Kabat and Joshua Croteau and Jeremy Davis
and Jonathan M. Hernandez and Ronald N. Germain},
title = {{IBEX: A} versatile multiplex optical imaging approach for deep phenotyping and spatial analysis of cells in complex tissues},
journal = {Proceedings of the National Academy of Sciences},
year = {2020},
volume = {117},
number = {52},
pages = {33455--33465},
}
-
[J] "DicomAnnotator: a Configurable Open-Source Software Program for Efficient DICOM Image Annotation",
Q. Dong, G. Luo, D. Haynor, M. O'Reilly, K. Linnau, Z. Yaniv, J. G. Jarvik, N. Cross,
Journal of Digital Imaging, 33(6): 1514-1526, 2020.
[pdf, Bibref].
The source code for the work described in the manuscript is available on GitHub.
@Article{dong2020,
author = {Qifei Dong and Gang Luo and David Haynor and Michael O'Reilly and Ken Linnau and Ziv Yaniv and Jeffrey G. Jarvik and Nathan Cross},
title = {{DicomAnnotator}: a Configurable Open-Source Software Program for Efficient DICOM Image Annotation},
journal = {Journal of Digital Imaging},
year = {2020},
volume = {33},
number = {6},
pages = {1514--1526}
}
2019
-
[J] "A Distance Map Regularized CNN for Cardiac Cine MR Image Segmentation",
S. Dangi, C. Linte, Z. Yaniv,
Med. Phys., 46(12): 5637-5651, 2019.
[pdf, Bibref].
@Article{dangi2019,
author = {Shusil Dangi and Cristian Linte and Ziv Yaniv},
title = {A Distance Map Regularized {CNN} for Cardiac Cine {MR} Image Segmentation},
journal = Med. Phys.,
year = {2019},
volume = {46},
number = {12},
pages = {5637--5651}
}
-
[J] "Marker-Free Registration Method for Standing X-ray Panorama Reconstruction for Hip-Knee-Ankle Axis Deformity Assessment",
Y. K. Ben-Zikri, K. Baum, Z. Yaniv, C. A. Linte,
Computer Methods in Biomechanics and Biomedical Engineering, 7(4): 464-478, 2019.
[pdf, Bibref]. A related SimpleITK
based Jupyter notebook is available on GitHub.
@Article{benzikri2019,
author = {Yehuda K. Ben-Zikri and Karl Baum and Ziv R. Yaniv and Cristian A. Linte},
title = {Marker-Free Registration Method for Standing {X-ray} Panorama Reconstruction for Hip-Knee-Ankle Axis Deformity Assessment},
journal = {Computer Methods in Biomechanics and Biomedical Engineering},
year = {2019},
volume = {7},
number = {4},
pages = {464--478}
}
2018
-
[B] "Mixed and Augmented Reality in Medicine",
T. Peters, C. A. Linte, Z. Yaniv, J. Williams eds.,
CRC Press, 2018
[publisher, Bibref].
@Book{peters2018,
title = {Mixed and Augmented Reality in Medicine},
year = {2018},
editor = {Terry Peters and Cristian A. Linte and Ziv Yaniv and Jackie Williams},
publisher = {CRC Press}
}
-
[BC] "Cost Effective Simulation; A Mixed Reality Approach", Z. Yaniv, O. Guler, R. H. Gong,
in Mixed and Augmented Reality In Medicine, ch. 10, CRC Press, 2018
[publisher, Bibref].
@InCollection{yaniv2018b,
author = {Ziv Yaniv and \"{O}zg\"{u}r G\"{u}ler and Ren Hui Gong},
title = {Cost Effective Simulation; A Mixed Reality Approach},
booktitle = {Mixed and Augmented Reality In Medicine},
year = {2018},
publisher = {CRC Press},
chapter = {10}
}
-
[J] "Image Segmentation, Registration and Characterization in R with SimpleITK", R. Beare and B. C. Lowekamp, Z. Yaniv,
Journal of Statistical Software, 86(8), 2018.
[pdf, Bibref].
@Article{beare2018,
author = {Richard Beare and Bradley Lowekamp and Ziv Yaniv},
title = {Image Segmentation, Registration and Characterization in {R} with {SimpleITK}},
journal = {Journal of Statistical Software},
year = {2018},
volume = {86},
number = {8}
}
The code is available on GitHub. A devtools based installer is
also available on GitHub.
-
[C] "Left Ventricle Segmentation and Quantification from Cardiac Cine MR Images via Multi-task Learning", S. Dangi, Z. Yaniv, C. Linte,
Statistical Atlases and Computational Modelling of the Heart, 2018.
[pdf, Bibref].
@InProceedings{dangi2018b,
author = {Shusil Dangi and Ziv Yaniv and Cristian Linte},
title = {Left Ventricle Segmentation and Quantification from Cardiac Cine {MR} Images via Multi-task Learning},
booktitle = {Statistical Atlases and Computational Modelling of the Heart},
year = {2018}
}
-
[T] "Scalable Simple Linear Iterative Clustering (SSLIC) Using a Generic and Parallel Approach", B. C. Lowekamp, D. T. Chen, Z. Yaniv, T. S. Yoo,
Insight Journal, January-December, 2018.
[pdf, Bibref].
@ARTICLE{lowekamp2018,
author = {Bradley C. Lowekamp and David T. Chen and Ziv Yaniv and Terry S. Yoo},
title = {Scalable Simple Linear Iterative Clustering {(SSLIC)} Using a Generic and Parallel Approach},
journal = {Insight Journal},
year = {2018},
doi = {http://hdl.handle.net/10380/3596}
}
The code is available as part of SimpleITK.
-
[C] "Cine cardiac MRI slice misalignment correction towards full 3D left ventricle segmentation", S. Dangi, C. Linte, Z. Yaniv,
SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling, 2018.
[pdf, Bibref].
@InProceedings{dangi2018,
author = {Shusil Dangi and Cristian Linte and Ziv Yaniv},
title = {Cine cardiac {MRI} slice misalignment correction towards full {3D} left ventricle segmentation},
booktitle = {SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling},
year = {2018}
}
-
[J] "SimpleITK Image-Analysis Notebooks: a Collaborative
Environment for Education and Reproducible Research", Z. Yaniv, B. C. Lowekamp, H. J. Johnson, R. Beare,
Journal of Digital Imaging, 31(3), pp. 290-303 2018.
[pdf, Bibref].
@Article{yaniv2018,
author = {Ziv Yaniv and Bradley C. Lowekamp and Hans J. Johnson and Richard Beare},
title = {{SimpleITK} Image-Analysis Notebooks: A Collaborative Environment for Education and Reproducible Research},
journal = {Journal of Digital Imaging},
year = {2018},
volume = {31},
number = {3},
pages = {290--303}
}
The code is available
on GitHub.
2016
-
[C] "The National Library of Medicine Pill Image Recognition Challenge: An Initial Report", Z. Yaniv, J. Faruque,
S. Howe, A. Bond, P. Perillan, K. Dunn, D. Sharlip, O. Bodenreider, M. J. Ackerman, T. S. Yoo,
IEEE Applied Imagery Pattern Recognition Workshop (AIPR), 2016.
[pdf, Bibref].
@InProceedings{yaniv2016,
Title = {The National Library of Medicine Pill Image Recognition Challenge: An Initial Report},
Author = {Ziv Yaniv and Jessica Faruque and Sally Howe and Andrew Bond and Pablo Perillan and Kathel Dunn and David Sharlip and Olivier Bodenreider and Michael J. Ackerman and Terry S. Yoo},
Booktitle = {{IEEE} Applied Imagery Pattern Recognition Workshop ({AIPR})},
Year = {2016},
Pages = {1--9}
}
All of the data used in this work is available from the NLM,
-
[M] "Image-Guided Interventions We’ve come a long way, but are we there?", C. A. Linte and Z. Yaniv,
IEEE Pulse, 7(6), pp. 46-50 2016.
[pdf, Bibref].
@Article{linte2016,
Title = {Image-Guided Interventions We’ve come a long way, but are we there?},
Author = {Cristian A. Linte and Ziv Yaniv},
Journal = {IEEE Pulse},
Year = {2016},
Number = {6},
Pages = {46--50},
Volume = {7}
}
-
[C] "Cost-Effective Surgical Registration Using Consumer Depth Cameras", M. Potter and Z. Yaniv,
SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling, 2016.
[preprint pdf, Bibref].
@InProceedings{potter2016,
Title = {Cost-Effective Surgical Registration Using Consumer Depth Cameras},
Author = {Michael Potter and Ziv Yaniv},
Booktitle = {SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling},
Year = {2016}
}
2015
-
[BC] "Registration for Orthopaedic Interventions", Z. Yaniv,
in Computational Radiology for Orthopaedic Interventions, ch. 3, Springer, 2015
[pdf preprint, Bibref].
@InCollection{yaniv2015c,
Title = {Registration for Orthopaedic Interventions},
Author = {Ziv Yaniv},
Booktitle = {Computational Radiology for Orthopaedic Interventions},
Publisher = {Springer International Publishing},
Year = {2015},
Chapter = {3},
Editor = {Guoyan Zheng and Shuo Li},
Pages = {41--70}
}
-
[BC] "Applications of Augmented Reality in the Operating Room", Z. Yaniv, C. A. Linte,
in Fundamentals of Wearable Computers and Augmented Reality, Second Edition, ch. 19, CRC Press, 2015
[pdf preprint, Bibref].
@InCollection{yaniv2015d,
Title = {Applications of Augmented Reality in the Operating Room},
Author = {Ziv Yaniv and Cristian A. Linte},
Booktitle = {Fundamentals of Wearable Computers and Augmented Reality},
Publisher = {CRC Press},
Year = {2015},
Chapter = {19},
Edition = {2'nd},
Editor = {Woodrow Barfield and Bruce Thomas and Tom Martin},
Pages = {485-518},
}
-
[M] "If We Can See It, We Can Fix It: From Medical Imaging to Guidance Environments
for Computer-Assisted Interventions", C. A. Linte, Z. Yaniv, IEEE lifesciences
newsletter.
-
[C] "Which Pivot Calibration?", Z. Yaniv,
SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling, 2015.
[pdf, Bibref].
@InProceedings{yaniv2015,
Title = {Which Pivot Calibration?},
Author = {Ziv Yaniv},
Booktitle = {SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling},
Year = {2015}
}
2014
-
[C] "A Framework for Semi-automatic Fiducial Localization in Volumetric Images", D. Nagy, T. Haidegger, Z. Yaniv,
9th International Workshop on Augmented Environments for Computer-Assisted Interventions (AE-CAI), 2014.
[pdf, Bibref].
@InProceedings{nagy2014,
Title = {A Framework for Semi-Automatic Fiducial Localization in Volumetric Images},
Author = {D\'{e}nes \'{A}kos Nagy and Tam\'{a}s Haidegger and Ziv Yaniv},
Booktitle = {Augmented Environments for Computer-Assisted Interventions (AE-CAI)},
Year = {2014},
Pages = {138--148},
}
-
[C] "Source Code Control Workflows for Open Source Software", K. A. Gary, Z. Yaniv, Ö. Güler, K. Cleary, A. Enquoharie,
13'th International Conference on Software Engineering Research and Practice (SERP'14), 2014.
[pdf, Bibref].
@InProceedings{gary2014,
Title = {Source Code Control Workflows for Open Source Software},
Author = {Kevin A. Gary and Ziv Yaniv and \"{O}zg\"{u}r G\"{u}ler and Kevin Cleary and Andinet Enquoharie},
Booktitle = {International Conference on Software Engineering Research and Practice (SERP'14)},
Year = {2014}
}
-
[J] "When change happens: computer assistance and image guidance for minimally
invasive therapy", C. A. Linte, Z. Yaniv,
Healthcare Technology Letters, 1(1), pp. 2-5, 2014.
[pdf, Bibref].
@ARTICLE{linte2014,
author = {Cristian A. Linte and Ziv Yaniv},
title = {When change happens: computer assistance and image guidance for minimally
invasive therapy},
journal = {Healthcare Technology Letters},
year = {2014},
volume = {1},
pages = {2-5},
number = {1},
issue = {1}
}
-
[J] "Treatment Planning and Image Guidance for Radiofrequency Ablation of Large Tumors", H. Ren, E. Campos-Nanez,
Z. Yaniv, F. Banovac, H. Abeledo, N. Hata, K. Cleary,
IEEE J. Biomed. Health Inform.,18(3),pp. 920-928, 2014.
[pdf, Bibref].
@Article{ren2014,
Title = {Treatment Planning and Image Guidance for Radiofrequency Ablation of Large Tumors},
Author = {Hongliang Ren and Enrique Campos-Nanez and Ziv Yaniv and Filip Banovac and Hernan Abeledo and
Nobuhiko Hata and Kevin Cleary},
Journal = {IEEE Journal of Biomedical and Health Informatics},
Year = {2014},
Number = {3},
Pages = {920--928},
Volume = {18},
}
-
[C] "A Cost Effective and High Fidelity Fluoroscopy Simulator using the
Image-Guided Surgery Toolkit (IGSTK)", R. Gong, B. Jenkins, R. Sze, Z. Yaniv,
SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling, 2014.
[pdf, Bibref].
@INPROCEEDINGS{gong2014,
author = {Ren Hui Gong and Brad Jenkins and Raymond W. Sze and Ziv Yaniv},
title = {A Cost Effective and High Fidelity Fluoroscopy Simulator using the
Image-Guided Surgery Toolkit {(IGSTK)}},
booktitle = {SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling},
year = {2014}
}
A video showing the system in action is available on YouTube.
-
[BC] "A tutorial on Image-Guided Therapy", Ö. Güler, Z. Yaniv,
in Applied Medical Image Processing, Second Edition, ch. 11, CRC Press, 2014
[Bibref]. The latest version of the software
accompanying this chapter is freely available here.
@INCOLLECTION{guler2014,
author = {\"{O}zg\"{u}r G\"{u}ler and Ziv Yaniv},
title = {A tutorial on image guided therapy},
booktitle = {Applied Medical Image Processing: A Basic Course},
publisher = {CRC Press},
year = {2014},
chapter = {11},
edition = {2'nd}
}
2013
-
[J] "Interactive Initialization of 2D/3D Rigid Registration", R. H. Gong, Ö. Güler, M. Kürklüoglu,
J. Lovejoy, Z. Yaniv,
Med. Phys., 20(12), pp. 121911, 2013.
[pdf, Bibref].
@ARTICLE{gong2013d,
author = {Ren Hui Gong and \"{O}zg\"{u}r G\"{u}ler and Mustafa K\"{u}rkl\"{u}oglu
and John Lovejoy and Ziv Yaniv},
title = {Interactive Initialization of {2D/3D} Rigid Registration},
journal = {Med. Phys.},
year = {2013},
volume = {20},
pages = {121911},
number = {12}
}
-
[C] "Towards A Clinical Stereoscopic Augmented Reality System for Laparoscopic Surgery", X. Kang, J. Oh, E. Wilson, Z. Yaniv, T. Kane, C. Peters, R. Shekhar,
2'nd International Workshop on Clinical Image-Based Procedures, From Planning to Intervention, 2013 (Best Paper).
[pdf, Bibref].
@INPROCEEDINGS{kang2013,
author = {Xin Kang and Jihun Oh and Emmanuel Wilson and Ziv Yaniv and Timothy
D. Kane and Craig A. Peters and Raj Shekhar},
title = {Towards A Clinical Stereoscopic Augmented Reality System for Laparoscopic
Surgery},
booktitle = {International Workshop on Clinical Image-Based Procedures, From Planning
to Intervention},
year = {2013}
}
-
[C] "An Augmented Reality Approach for Initializing 2D/3D Registration", R. Gong, Ö. Güler, J. Lovejoy, Z. Yaniv, 6th International Workshop on Medical Imaging and Augmented Reality, 2013.
[pdf, Bibref].
@INPROCEEDINGS{gong2013c,
author = {Ren Hui Gong and \"{O}zg\"{u}r G\"{u}ler and John Lovejoy and Ziv Yaniv},
title = {An Augmented Reality Approach for Initializing {2D/3D} Registration},
booktitle = {6th International Workshop on Medical Imaging and Augmented Reality},
year = {2013},
}
-
[C] "Interactive initialization for 2D/3D intra-operative registration using the Microsoft Kinect", R. Gong, Ö. Güler, Z. Yaniv, SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling, 2013.
[pdf, Bibref].
@INPROCEEDINGS{gong2013b,
author = {Ren Hui Gong and \"Ozgur G\"uler and Ziv Yaniv},
title = {Interactive Initialization for {2D/3D} Intra-Operative Registration
using the Microsoft Kinect},
booktitle = {SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions,
and Modeling},
year = {2013},
}
-
[C] "A framework for automatic tuning of system parameters and its use in image registration", R. Gong, Z. Yaniv,
SPIE Medical Imaging: Image Processing, 2013.
[pdf, Bibref].
@INPROCEEDINGS{gong2013a,
author = {Ren Hui Gong and Ziv Yaniv},
title = {A Framework for Automatic Tuning of System Parameters and Its Use
in Image Registration},
booktitle = {SPIE Medical Imaging: Image Processing},
year = {2013}
}
2012
-
[T] "Document Object Model based XML Handling in ITK", R. H. Gong, Z. Yaniv,
Insight Journal, January-December, 2012.
[pdf, Bibref].
@ARTICLE{gong2012,
author = {Ren Hui Gong and Ziv Yaniv},
title = {Document Object Model based {XML} Handling in {ITK}},
journal = {Insight Journal},
year = {2012},
doi = {http://hdl.handle.net/10380/3387},
}
-
[C] "Image-Guided Navigation: A Cost Effective Practical Introduction
using the Image-Guided Surgery Toolkit (IGSTK)", Ö. Güler, Z. Yaniv,
Proceedings of the 34th Annual International Conference of the IEEE EMBS, 2012.
[pdf, Bibref].
@INPROCEEDINGS{guler2012a,
author = {\"{O}zg\"{u}r G\"{u}ler and Ziv Yaniv},
title = {Image-Guided Navigation: A Cost Effective Practical Introduction
using the Image-Guided Surgery Toolkit {(IGSTK)}},
booktitle = {International Conference of the IEEE Engineering in Medicine and Biology Society {(EMBC)}},
year = {2012}
}
All of the tutorial material (programs, videos, presentations) is available here.
-
[M] "Image-Guided Interventions Tutorial with IGSTK", Ö. Güler, Z. Yaniv,
Kitware's The Source, Software Developers Quarterly, July 2012.
[pdf, Bibref].
@ARTICLE{guler2012b,
author = {\"{O}zg\"{u}r G\"{u}ler and Ziv Yaniv},
title = {Image-Guided Interventions Tutorial with {IGSTK}},
journal = {Kitware, The Source},
year = {2012},
pages = {11-14},
}
2011
-
[J] "Agile methods for open source safety-critical software", K. Gary, A. Enquobahrie, L. Ibanez, P. Cheng,
Z. Yaniv, K. Cleary, S. Kokoori, B. Muffih, J. Heidenreich,
Softw. Pract. Exper., 41(9), pp. 945-962, 2011.
[pdf, Bibref].
@ARTICLE{gary2011,
author = {Kevin Gary and Andinet Enquobahrie and Luis Ib{\'a}{\~n}ez and Patrick Cheng
and Ziv Yaniv and Kevin Cleary and Shylaja Kokoori and Benjamin Muffih and John Heidenreich},
title = {Agile methods for open source safety-critical software},
journal = {Softw. Pract. Exper.},
year = {2011},
volume = {41},
pages = {945--962},
number = {9}
}
-
[C] "Online Temporal Synchronization of Pose and Endoscopic Video Streams", O. Guler, Z. Yaniv, W. Freysinger,
SPIE Medical Imaging: Image Processing, 2011
[pdf,
Bibref].
@INPROCEEDINGS{guler2011,
author = {\"{O}zg\"{u}r G\"{u}ler and Ziv Yaniv and Wolfgang Freysinger},
title = {Online Temporal Synchronization of Pose and Endoscopic Video Streams},
booktitle = {SPIE Medical Imaging: Visualization, Image-Guided Procedures, and
Display},
year = {2011}
}
-
[C] "Ultrasound calibration framework for the image-guided
surgery toolkit (IGSTK)", Z. Yaniv, P. Foroughi, H.-J. Kang, E. Boctor,
SPIE Medical Imaging: Image Processing, 2011
[pdf,
Bibref].
@INPROCEEDINGS{yaniv2011a,
author = {Ziv Yaniv and Pezhman Foroughi and Hyun-Jae Kang and Emad Boctor},
title = {Ultrasound Calibration Framework for the Image-Guided Surgery Toolkit
{(IGSTK)}},
booktitle = {SPIE Medical Imaging: Visualization, Image-Guided Procedures, and
Display},
year = {2011}
}
2010
-
[T] "Random Sample Consensus (RANSAC) Algorithm, A Generic Implementation", Z. Yaniv,
Insight Journal, July-December 2010.
[pdf, Bibref].
@ARTICLE{yaniv2010d,
author = {Ziv Yaniv},
title = {Random Sample Consensus (RANSAC) Algorithm, A Generic Implementation Insight},
journal = {Insight Journal},
year = {2010},
volume = {July-December},
doi = {http://hdl.handle.net/10380/3223}
}
Source code and the paper are freely available from
the Insight Journal.
-
[J] "Evaluation of Spherical Fiducial Localization in C-arm Cone-Beam CT using Patient Data", Z. Yaniv,
Med. Phys., 37(10), pp. 5298-5305, 2010.
[pdf, Bibref].
@ARTICLE{yaniv2010c,
author = {Ziv Yaniv},
title = {Evaluation of Spherical Fiducial Localization in {C-arm} Cone-Beam {CT} using Patient Data},
journal = {Med. Phys.},
year = {2010},
volume = {37},
pages = {5298--5305},
number = {10}
}
Source code for the algorithms described in this paper is available
here.
-
[C] "Evaluation of a 4D cone-beam CT reconstruction approach using an
anthropomorphic phantom", Z. Yaniv, J. Boese, M. Sarmiento, and K. Cleary,
in Information Processing in Computer-Assisted Interventions (IPCAI), 2010
[pdf,
Bibref].
@CONFERENCE{yaniv2010b,
author = {Ziv Yaniv and Jan Boese and Marily Sarmiento and Kevin Cleary},
title = {Evaluation of a {4D} Cone-Beam {CT} Reconstruction Approach using
an Anthropomorphic Phantom},
booktitle = {Information Processing in Computer-Assisted Interventions (IPCAI)},
year = {2010}
}
-
[J] "Needle-based interventions with the image-guided surgery toolkit
(IGSTK): From phantoms to clinical trials, Z. Yaniv, P.Cheng,
E. Wilson, T. Popa, D. Lindisch, E. Campos-Nanez, H. Abeledo,
V. Watson, K. Cleary, and F. Banovac,IEEE Trans. Biomed. Eng., 57(4),
pp. 922-933, 2010
[pdf,
Bibref].
@ARTICLE{yaniv2010a,
author = {Ziv Yaniv and Patrick Cheng and Emmanuel Wilson and Teo Popa and
David Lindisch and Enrique Campos-Nanez and Hernan Abeledo and Vance
Watson and Kevin Cleary and Filip Banovac},
title = {Needle-Based Interventions With the Image-Guided Surgery Toolkit
{(IGSTK)}: From Phantoms to Clinical Trials},
journal = {{IEEE} Trans. Biomed. Eng.},
year = {2010},
volume = {57},
pages = {922--933},
number = {4}
}
-
[C] "Quantitative CT for volumetric analysis of medical images:
Initial results for liver tumors", A. S. Behnaz, J. Snider,
C. Eneh, G. Esposito, E. Wilson, Z. Yaniv, E. Cohen, K. Cleary,
SPIE Medical Imaging: Image Processing, 2010
[pdf,
Bibref].
@INPROCEEDINGS{behnaz2010,
author = {Alexander S. Behnaz and James Snider and Chibuzor Eneh and Giuseppe
Esposito and Emmanuel Wilson and Ziv Yaniv and Emil Cohen and Kevin
Cleary},
title = {Quantitative {CT} for Volumetric Analysis of Medical Images: Initial
Results for Liver Tumors},
booktitle = {SPIE Medical Imaging: Image Processing},
year = {2010}
}
2009
-
[J] "OpenIGTLink: An Open Network Protocol for Image-Guided Therapy Environment",
J. Tokuda, G. S. Fischer, X. Papademetris, Z. Yaniv et al., The International Journal of Medical Robotics
and Computer Assisted Surgery, 5(4), pp. 423-434, 2009
[pdf, Bibref].
@ARTICLE{tokuda2009,
author = {Junichi Tokuda and Gregory S. Fischer and Xenophon Papademetris and
Ziv Yaniv and Luis Ibanez and Patrick Cheng and Haiying Liu and Jack
Blevins and Jumpei Arata and Alexandra Golby and Tina Kapur and Steve
Pieper and Everette C. Burdette and Gabor Fichtinger and Clare M.
Tempany and Nobuhiko Hata},
title = {{OpenIGTLink}: An Open Network Protocol for Image-Guided Therapy
Environment},
journal = {The International Journal of Medical Robotics
and Computer Assisted Surgery},
year = {2009},
volume = {5},
pages = {423--434},
number = {4},
}
The code and more information is available from the OpengIGTLink website.
-
[J] "Localizing spherical fiducials in C-arm based cone-beam CT",
Z. Yaniv,
Med. Phys., Vol. 36(11), pp. 4957-4966, 2009
[pdf, Bibref].
@ARTICLE{yaniv2009d,
author = {Ziv Yaniv},
title = {Localizing spherical fiducials in C-arm based cone-beam {CT}},
journal = {Med. Phys.},
year = {2009},
volume = {36},
pages = {4957--4966},
number = {11},
}
Source code for the algorithms described in this paper is available
here, sample data is available
on zenodo.
-
[C] "Evaluation of a 4D Cone-Beam CT Reconstruction Approach using
a Simulation Framework", A. Hartl, Z. Yaniv,
Proceedings of the 31st Annual International Conference of the IEEE EMBS,
2009 [pdf,
Bibref].
@INPROCEEDINGS{hartl2009b,
author = {Alexander Hartl and Ziv Yaniv},
title = {Evaluation of a {4D} Cone-Beam {CT} Reconstruction Approach using
a Simulation Framework},
booktitle = {International Conference of the IEEE Engineering in Medicine and Biology Society {(EMBC)}},
pages = {5729--5732},
year = {2009},
}
-
[C] "Temporal calibration of tracking and image acquisition",
Oezgur Guler, Z. Yaniv, W. Freysinger, K. Cleary,
Int. Conf. on Computer-Assisted Radiology
and Surgery, 2009
[pdf,
Bibref].
@ARTICLE{guler2009,
author = {\"{O}zg\"{u}r G\"{u}ler and Ziv Yaniv and Wolfgang Freysinger and
Kevin Cleary},
title = {Temporal calibration of tracking and image acquisition},
journal = {International Journal of Computer Assisted Radiology and Surgery},
year = {2009},
volume = {Suppl. 1},
pages = {S275--S276},
}
-
[C] "A comparison study of two reconstruction methods for gated Cone-Beam CT",
A. Hartl, Z. Yaniv,Int. Conf. on Computer-Assisted Radiology
and Surgery, 2009
[pdf,
Bibref].
@ARTICLE{hartl2009a,
author = {Alexander Hartl and Ziv Yaniv},
title = {A comparison study of two reconstruction methods for gated Cone-Beam
{CT}},
journal = {International Journal of Computer Assisted Radiology and Surgery},
year = {2009},
volume = {Suppl. 1},
pages = {S341--S342},
}
-
[B] "IGSTK: The Book",
K. Cleary, P. Cheng, A. Enquobahrie, Z. Yaniv eds.,
Signature Book Printing, 2009
[pdf, Bibref].
@BOOK{IGSTKBook2009,
title = {IGSTK: The Book},
publisher = {Signature Book Printing},
year = {2009},
editor = {Kevin Cleary and Patrick Cheng and Andinet Enquobahrie and Ziv Yaniv},
}
-
[J] "Electromagnetic Tracking in the Clinical Environment",
Z. Yaniv, E. Wilson, D. Lindisch, K. Cleary,
Med. Phys., Vol. 36(3), pp. 876-892, 2009
[pdf, Bibref].
@ARTICLE{yaniv2009b,
author = {Ziv Yaniv and Emmanuel Wilson and David Lindisch and Kevin Cleary},
title = {Electromagnetic Tracking in the Clinical Environment},
journal = {Med. Phys.},
year = {2009},
volume = {36},
pages = {876--892},
number = {3}
}
-
[C] "Interfacing Proprietary Hardware with the Image-Guided Surgery Toolkit (IGSTK):
a Case for the OpenIGTLink Protocol", S. Ordas, Z. Yaniv, P. Cheng, J. Tokuda,
H. Liu, N. Hata, K. Cleary,
SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display,
2009 [pdf,
Bibref].
@INPROCEEDINGS{ordas2009,
author = {Seb\'{a}sti\'{a}n Ordas and Ziv Yaniv and Patrick Cheng and Junichi
Tokuda and Haying Liu and Nobuhiko Hata and Kevin Cleary},
title = {Interfacing Proprietary Hardware with the Image-Guided Surgery Toolkit
{(IGSTK)}: a Case for the {OpenIGTLink} Protocol},
booktitle = {SPIE Medical Imaging: Visualization, Image-Guided Procedures, and
Display},
year = {2009}
}
-
[C] "Fiducial localization in C-arm based Cone-Beam CT", Z. Yaniv,
SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display,
2009 [pdf,
Bibref].
@INPROCEEDINGS{yaniv2009,
author = {Ziv Yaniv},
title = {Fiducial localization in {C-arm} based {Cone-Beam CT}},
booktitle = {SPIE Medical Imaging: Visualization, Image-Guided Procedures, and
Display},
year = {2009}
}
Source code for the algorithms described in this paper is available
here.
2008
-
[J] "Designing tracking software for image guided surgery applications:
IGSTK experience",
A. Enquobahrie, D. Gobbi, M. W. Turek, P.
Cheng, Z. Yaniv, F. Lindseth, K. Cleary,
International Journal of Computer Assisted Radiology and Surgery, Vol. 3(5), pp. 395-403, 2008
[pdf, Bibref].
@ARTICLE{enquobahrie2008,
author = {Andinet Enquobahrie and David Gobbi and Matthew W. Turek and Patrick
Cheng and Ziv Yaniv and Frank Lindseth and Kevin Cleary},
title = {Designing tracking software for image guided surgery applications:
{IGSTK} experience},
journal = {International Journal of Computer Assisted Radiology and Surgery},
year = {2008},
volume = {3},
pages = {395--403},
number = {5}
}
-
[T] "IGSTK: Building High Quality Roads with Open Source Software", L. Ibanez, A. Enquobahrie, M. Turek, J. Jomier,
R. Avila, P. Cheng, Z. Yaniv, F. Lindseth, K. Gary, K. Cleary,
Workshop on Systems and Architecture for Computer Assisted Intervention in
conjunction with MICCAI, 2008 [pdf,
Bibref].
@MISC{ibanez2008,
author = {Luis Ib{\'a}{\~n}ez and Andinet Enquobahrie and Matt Turek and Julien
Jomier and Rick Avila and Patrick Cheng and Ziv Yaniv and Frank Lindseth
and Kevin Gary and Kevin Cleary},
title = {{IGSTK}: Building High Quality Roads with Open Source Software},
howpublished = {Systems and Architecture for Computer Assisted Intervention Workshop,
{(MICCAI)}},
year = {2008}
}
-
[T] "Electromagnetic Tracking in the Clinical Environment: A Buyer’s Guide", Z. Yaniv,
E. Wilson, D. Lindisch, K. Cleary,
Technical report, July 2008 [pdf,
Bibref].
@TECHREPORT{yaniv2008b,
author = {Ziv Yaniv and Emmanuel Wilson and David Lindisch and Kevin Cleary},
title = {Electromagnetic Tracking in the Clinical Environment: A Buyer’s Guide},
institution = {Imaging Science and Information Systems Center, Georgetown University},
year = {2008},
month = {July},
}
-
[BC] "Rigid Registration", Z. Yaniv,
in Image-Guided Interventions Technology and Applications, ch. 6,
Springer-Verlag, 2008 [pdf initial version,
Bibref].
@INCOLLECTION{yaniv2008a,
author = {Ziv Yaniv},
title = {Rigid Registration},
booktitle = {Image-Guided Interventions Technology and Applications},
publisher = {Springer-Verlag},
year = {2008},
editor = {Terry Peters and Kevin Cleary},
chapter = {6}
}
-
[C] "Respiratory Signal Generation for Retrospective Gating of Cone-Beam
CT Images", S. Wiesner, Z. Yaniv,
SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display,
2008 [pdf,
Bibref].
@INPROCEEDINGS{wiesner2008,
author = {Stefan Wiesner and Ziv Yaniv},
title = {Respiratory Signal Generation for Retrospective Gating of Cone-Beam
{CT} Images},
booktitle = {SPIE Medical Imaging: Visualization, Image-Guided Procedures, and
Display},
year = {2008}
} Source code for the algorithms
described in this paper is available here.
-
[C] "A Buyer’s Guide to Electromagnetic Tracking Systems for Clinical
Applications", E. Wilson, Z. Yaniv, D. Lindisch, K. Cleary,
SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display,
2008 [pdf,
Bibref].
@INPROCEEDINGS{wilson2008,
author = {Emmanuel Wilson and Ziv Yaniv and David Lindisch and Kevin Cleary},
title = {A Buyer’s Guide to Electromagnetic Tracking Systems for Clinical
Applications},
booktitle = {SPIE Medical Imaging: Visualization, Image-Guided Procedures, and
Display},
year = {2008}
}
-
[C] "Accuracy Analysis of an Image-Guided System for Vertebroplasty therapy
based on Electromagnetic Tracking of Instruments",
J. Ding, N. Khan, P. Cheng, E. Wilson, V. Watson, K. Cleary, Z. Yaniv,
SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display,
2008 [pdf,
Bibref].
@INPROCEEDINGS{ding2008,
author = {Jienan Ding and Noureen Khan and Patrick Cheng and Emmanuel Wilson
and Vance Watson and Kevin Cleary and Ziv Yaniv},
title = {Accuracy Analysis of an Image-Guided System for Vertebroplasty therapy
based on Electromagnetic Tracking of Instruments},
booktitle = {SPIE Medical Imaging: Visualization, Image-Guided Procedures, and
Display},
year = {2008}
}
2007
-
[T] "The Development of the Image-Guided Surgical Toolkit (IGSTK): An Open Source
Package for Medical Interventions",
K. Gary, P. Cheng, Z. Yaniv, A. Enquobahrie, L. Ibanez, and K. Cleary,
Workshop on Software and Systems for Medical Devices and Services in
conjunction with IEEE Real-Time Systems Symposium (RTSS), 2007 [pdf,
Bibref].
@Misc{gary2007,
author = {Kevin Gary and Patrick Cheng and Ziv Yaniv and
Andinet Enquobahrie and Luis Ib{\'a}{\~n}ez and Kevin Cleary},
title = {The Development of the Image-Guided Surgical Toolkit (IGSTK): An Open Source
Package for Medical Interventions},
howpublished = {Workshop on Software and Systems for Medical Devices and Services in
conjunction with IEEE Real-Time Systems Symposium (RTSS)},
year = {2007},
}
-
[J] "The Image-Guided Surgery Toolkit IGSTK: An Open Source
C++ Software Toolkit",
A. Enquobahrie and P. Cheng and K. Gary and L. Ibanez
and D. Gobbi and F. Lindseth and Z. Yaniv and S. Aylward and J. Jomier and K. Cleary,
Journal of Digital Imaging, Vol. 20(Suppl. 1), pp. 21--33, 2007
(Best Paper - Second Place)
[pdf,
Bibref].
@ARTICLE{enquobahrie2007,
author = {Andinet Enquobahrie and Patrick Cheng and Kevin Gary and Luis Ib{\'a}{\~n}ez
and David Gobbi and Frank Lindseth and Ziv Yaniv and Stephen Aylward and Julien Jomier and Kevin Cleary},
title = {The Image-Guided Surgery Toolkit {IGSTK}: An Open Source {C++} Software Toolkit},
journal = {Journal of Digital Imaging},
year = {2007},
volume = {20},
pages = {21--33},
number = {Suppl. 1},
}
-
[C] "Monitoring Patient Respiration using a Single Optical Camera",
S. Wiesner, Z. Yaniv,
Proceedings of the 29th Annual International Conference of the IEEE EMBS,
2007 [pdf,
Bibref].
@INPROCEEDINGS{wiesner2007,
author = {Stefan Wiesner and Ziv Yaniv},
title = {Monitoring Patient Respiration using a Single Optical Camera},
booktitle = {Annual International Conference of the IEEE EMBS},
year = {2007},
pages = {2740--2743},
}
-
[C] "The influence of CT based attenuation correction on
PET/CT registration: an evaluation study",
Z. Yaniv, K. H. Wong, F. Banovac, E. Levy, K. Cleary,
SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display,
2007 [pdf,
Bibref].
@InProceedings{yaniv2007a,
author = {Ziv Yaniv and Kenneth H. Wong and Filip Banovac and Elliot Levy and Kevin Cleary},
title = {The influence of {CT} based attenuation correction on
{PET/CT} registration: an evaluation study},
booktitle = {SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display},
pages = {650934-1--650934-7},
year = 2007,
publisher = {SPIE},
editor = {K. Cleary and M. Miga,}
}
-
[C] "A hardware and software protocol for the evaluation of electromagnetic tracker
accuracy in the clinical environment: a multi-center study",
E. Wilson, Z. Yaniv, H. Zhang, C. Nafis, E. Shen, G. Shechter,
A. D. Wiles, T. Peters, D. Lindisch, K. Cleary,
SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display,
2007 [pdf,
Bibref].
@InProceedings{wilson2007a,
author = {Emmanuel Wilson and Ziv Yaniv and Hui Zhang and Christopher Nafis
and Eric Shen and Guy Shechter and Andrew D. Wiles and Terry Peters
and David Lindisch and Kevin Cleary},
title = {A hardware and software protocol for the evaluation of electromagnetic tracker
accuracy in the clinical environment: a multi-center study},
booktitle = {SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display},
pages = {65092T-1--65092T-11},
year = 2007,
publisher = {SPIE},
editor = {K. Cleary and M. Miga,}
}
2006
-
[C] "Integrated PET/CT Guidance System for Oncologic Interventional Radiology",
K. H. Wong, E. Levy, Z. Yaniv, F. Banovac, D. Earl-Graef, K. Cleary, Proceedings of IEEE NSS-MIC 2006.
[pdf,
Bibref].
@InProceedings{wong2006,
author = {Kenneth H. Wong and Elliot Levy and Ziv Yaniv and Filip Banovac and David Earl-Graef and Kevin Cleary},
title = {Integrated {PET/CT} Guidance System for Oncologic Interventional Radiology},
booktitle = {{IEEE} Nuclear Science Symposium and Medical Imaging Conference},
pages = {2169--2173}
year = {2006},
}
-
[T] "Robot Assisted Needle Placement: Developed Using Image Guided Surgery Toolkit (IGSTK)",
P. Cheng, A. Enquobahrie, R. Stenzel, R. Lin, H. Zhang, Z. Yaniv, H. Kim, K. Cleary, Open Source Workshop MICCAI 2006.
[pdf,
Bibref].
@Misc{cheng2006,
author = {Peng Cheng and Andinet Enquobahrie and Roland Stenzel and Ralph
Lin and Hui Zhang and Ziv Yaniv and Hee-su Kim and Kevin Cleary},
title = {Robot Assisted Needle Placement: Developed Using Image Guided Surgery Toolkit {(IGSTK)}},
howpublished = {Open Source Workshop {MICCAI} 2006},
year = {2006},
}
-
[T] "Image-Guided Procedures: A Review",
Z. Yaniv, K. Cleary, Technical report, April 2006.
[pdf,
Bibref].
@TECHREPORT{yaniv2006c,
author = {Ziv Yaniv and Kevin Cleary},
title = {Image-Guided Procedures: A review},
institution = {Image Science and Information Systems Center, Georgetown University},
year = {2006},
number = {CAIMR TR-2006-3},
month = {April},
}
-
[C] "Fluoroscopy based accuracy assessment of
electromagnetic tracking",
Z. Yaniv, K. Cleary,
SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display,
2006 [
pdf,
Bibref].
@InProceedings{yaniv2006b,
author = {Ziv Yaniv and Kevin Cleary},
title = {Fluoroscopy based accuracy assessment of
electromagnetic tracking},
booktitle = {SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display},
pages = {168--174},
year = 2006,
publisher = {SPIE},
editor = {K. Cleary and R. Galloway}
}
-
[C] "A realistic simulation framework for assessing deformable
slice-to-volume (CT-fluoroscopy/CT) registration",
Z. Yaniv, R. Stenzel, K. Cleary, F. Banovac,
SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display,
2006 [
pdf,
Bibref].
@InProceedings{yaniv2006a,
author = {Ziv Yaniv and Roland Stenzel and Kevin Cleary and Filip Banovac},
title = {A realistic simulation framework for assessing deformable
slice-to-volume {(CT-fluoroscopy/CT)} registration},
booktitle = {SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display},
pages = {116--123},
year = 2006,
publisher = {SPIE},
editor = {K. Cleary and R. Galloway}
}
2005
-
[J] "Precision targeting of liver lesions using a novel electromagnetic
navigation device in physiologic phantom and swine",
F. Banovac, J. Tang, S. Xu, D. Lindisch H. Y. Chung, E. B. Levy,
T. Chang, M. F. McCullough, Z. Yaniv, B. J. Wood, K. Cleary,
Medical Physics,
Vol. 32(8), pp. 2698--2705, 2005 [
pdf,
Bibref].
@Article{banovac2005,
author = {Filip Banovac and Jonathan Tang and Sheng Xu and
David Lindisch and Ho Young Chung and Elliot B. Levy and
Thomas Chang and Michael F. McCullough and Ziv Yaniv and
Bradford J. Wood and Kevin Cleary},
title = {Precision targeting of liver lesions using a novel electromagnetic
navigation device in physiologic phantom and swine},
journal = {Med. Phys.},
year = 2005,
volume = 32,
number = 8,
pages = {2698--2705}
}
-
[J] "Precise Robot-Assisted Guide Positioning for Distal
Locking of Intramedullary Nails", Z. Yaniv, L. Joskowicz,
IEEE Trans. on Medical Imaging,
Vol. 24(5), pp. 624--635, 2005 [
pdf,
Bibref].
@Article{yaniv2005a,
author = {Ziv Yaniv and Leo Joskowicz},
title = {Precise Robot-Assisted Guide Positioning for Distal
Locking of Intramedullary Nails},
journal = {IEEE Trans. on Medical Imaging},
year = 2005,
volume = 24,
number = 5,
pages = {624--635}
}
2004
-
[C] "Robot-assisted Distal Locking of Long Bone Intramedullary Nails:
Localization, Registration, and In-Vitro Experiments",
Z. Yaniv, L. Joskowicz, Proc. of the 7th Int. Conf. on Medical Image Computing and Computer-Assisted
Intervention, 2004.
[pdf,
Bibref].
@InProceedings{yaniv2004c,
author = {Ziv Yaniv and Leo Joskowicz},
title = {Robot-assisted Distal Locking of Long Bone Intramedullary
Nails: Localization, Registration, and In-Vitro Experiments},
booktitle = {Medical Image Computing and Computer
Assisted Intervention},
pages = {58--65},
year = 2004,
publisher = {Springer},
editor = {C. Barillot and others}
}
-
[T] "Robot-assisted Distal Locking of Long Bone Intramedullary Nails:
Localization, Registration, and In-Vitro Experiments",
Z. Yaniv, L. Joskowicz, Technical report, April 2004.
[pdf,
Bibref].
@TechReport{yaniv2004b,
author = {Ziv Yaniv and Leo Joskowicz},
title = {Robot-assisted Distal Locking of Long Bone Intramedullary
Nails: Localization, Registration, and In-Vitro Experiments},
institution = {School of Engineering and Computer Science,
The Hebrew University of Jerusalem},
year = 2004,
month = {April}
}
-
[J] "Long Bone Panoramas from Fluoroscopic X-ray Images",
Z. Yaniv, L. Joskowicz,IEEE Trans. on Medical Imaging,
Vol. 23(1), pp. 26--35, 2004 [
pdf,
Bibref].
@Article{yaniv2004a,
author = {Ziv Yaniv and Leo Joskowicz},
title = {Long Bone Panoramas from Fluoroscopic {X-ray} Images},
journal = {IEEE Trans. on Medical Imaging},
year = 2004,
volume = 23,
number = 1,
pages = {26--35}
}
2003
-
[J] "Gradient-Based 2D/3D Rigid Registration of Fluoroscopic
X-ray to CT", H. Livyatan, Z. Yaniv, L. Joskowicz,
IEEE Trans. on Medical Imaging, Vol. 22(11), pp. 1395--1406, 2003
[pdf,
Bibref].
@Article{livyatan2003,
author = {Harel Livyatan and Ziv Yaniv and Leo Joskowicz},
title = {Gradient-Based {2D/3D} Rigid Registration of Fluoroscopic
{X-ray} to {CT}},
journal = {IEEE Trans. on Medical Imaging},
year = 2003,
volume = 22,
number = 11,
pages = {1395--1406}
}
-
[C] "Anatomical image-based rigid registration between fluoroscopic
X-ray and CT: methods and experimental results",
L. Joskowicz, D. Knaan, H. Livyatan, Z. Yaniv,
A. Khoury, R. Mosheiff, M. Liebergall,
Proc. of the 17th Int. Congress on Computer-Assisted Radiology
and Surgery, 2003
[pdf,
Bibref].
@InProceedings{joskowicz2003a,
author = {Leo Joskowicz and Dotan Knaan and Harel Livyatan and
Ziv Yaniv and Amal Khoury
and Rami Mosheiff and Meir Liebergall},
title = {Anatomical image-based rigid registration between
fluoroscopic {X-ray} and {CT}: methods and experimental results},
booktitle = {Computer Assisted Radiology and Surgery},
pages = {419--425},
year = 2003,
editor = {H. U. Lemke and others}
}
-
[C] "A robot-assisted system for long bone intramedullary distal
locking: concept and preliminary results",
L. Joskowicz, C. Milgrom, M. Shoham, Z. Yaniv, A. Simkin,
Proc. of the 17th Int. Congress on Computer-Assisted Radiology
and Surgery, 2003
[pdf,
Bibref].
@InProceedings{joskowicz2003b,
author = {Leo Joskowicz and Charles Milgrom and Moshe Shoham and
Ziv Yaniv and Ariel Simkin},
title = {A robot-assisted system for long bone intramedullary distal
locking: concept and preliminary results},
booktitle = {Computer Assisted Radiology and Surgery},
pages = {485--491},
year = 2003,
editor = {H. U. Lemke and others}
}
2002
-
[J] "Comparative in-vitro study of contact and image-based rigid
registration for computer-aided surgery", O. Sadowsky and Z. Yaniv
and L. Joskowicz, Computer Aided Surgery, Vol. 7(4),
pp. 223--236, 2002
[pdf,
Bibref].
@Article{sadowsky2002,
author = {Ofri Sadowsky and Ziv Yaniv and Leo Joskowicz},
title = {Comparative In Vitro Study of Contact and Image-Based
Rigid Registration for Computer-Aided Surgery},
journal = Computer Aided Surgery,
year = 2002,
volume = 7,
number = 4,
pages = {223--236}
}
-
[C] "Robust Automatic C-arm Calibration for Fluoroscopy-based Navigation:
a Practical Approach", H. Livyatan, Z. Yaniv, L. Joskowicz,
Proc. of the 5th Int. Conf. on Medical Image Computing and Computer-Assisted
Intervention, 2002
[pdf,
Bibref].
@InProceedings{livyatan02,
author = {Harel Livyatan and Ziv Yaniv and Leo Joskowicz},
title = {Robust automatic {C-arm} calibration for fluoroscopy-based
navigation: a practical approach},
booktitle = {Medical Image Computing and Computer
Assisted Intervention},
pages = {60--68},
year = 2002,
publisher = {Elsevier},
editor = {T. Dohi and others}
}
2001
-
[C] "Long bone panoramas from fluoroscopic X-ray images",
Z. Yaniv, L. Joskowicz, Proc. 15th Int. Congress on
Computer Assisted Radiology and Surgery,2001
[pdf,
Bibref].
@InProceedings{yaniv2001,
author = {Ziv Yaniv and Leo Joskowicz},
title = {Long bone panoramas from fluoroscopic {X-ray} images},
booktitle = {Computer Assisted Radiology and Surgery},
pages = {490--495},
year = 2001,
editor = {H. U. Lemke and others},
publisher = {Elsevier}
}
2000
-
[C] "In-Vitro Accuracy Study of Contact and Image-Based Registration:
Materials, Methods, and Experimental Results", Z. Yaniv, O. Sadowsky,
L. Joskowicz, Proc. of the 14th Int. Congress on Computer
Assisted Radiology and Surgery, 2000
[pdf,
Bibref].
@InProceedings{yaniv2000,
author = {Ziv Yaniv and Ofri Sadowsky and Leo Joskowicz},
title = {In-Vitro Accuracy Study of Contact and
Image-Based Registration: Materials, Methods,
and Experimental Results},
booktitle = {Computer Assisted Radiology and Surgery},
pages = {141--146},
year = 2000,
editor = {H.U. Lemke and others}
}
1999
-
[T] "In-vitro accuracy of contact-based registration: materials,
methods, and experimental results", Z. Yaniv, O. Sadowsky,
G. Leshem, L. Joskowicz, Technical report, December 1999.
[pdf,
Bibref].
@TechReport{yaniv1999,
author = {Ziv Yaniv and Ofri Sadowsky and Guy Leshem
and Leo Joskowicz},
title = {In-vitro accuracy of contact-based registration: materials,
methods, and experimental results},
institution = {Institute of Computer Science,
The Hebrew University of Jerusalem},
year = 1999,
month = {December}
}
1998
-
[J] "FRACAS: A System for Computer-Aided Image-Guided Long Bone
Fracture Surgery", L. Joskowicz, C. Milgrom, A. Simkin,
L. Tockus, Z. Yaniv, Computer Aided Surgery, Vol. 3(6),
pp. 271--288, 1998
[pdf,
Bibref].
@Article{joskowicz-cas99,
author = {Leo Joskowicz and Charles Milgrom and Ariel Simkin
and Lana Tockus and Ziv Yaniv},
title = {{FRACAS}: A System for Computer-Aided Image-Guided
Long Bone Fracture Surgery},
journal = {Computer Aided Surgery},
year = 1998,
volume = 3,
number = 6,
pages = {271--288}
}
-
[C] "Computer-Aided Image-Guided Bone Fracture Surgery:
Concept and Implementation", L. Joskowicz, L. Tockus,
Z. Yaniv, A. Simkin, C. Milgrom,
Proc. of the 12th Int. Congress on Computer Assisted Radiology
and Surgery, 1998
[pdf,
Bibref].
@InProceedings{joskowicz1998,
author = {Leo Joskowicz and Lana Tockus and Ziv Yaniv and
Ariel Simkin and Charles Milgrom},
title = {Computer-Aided Image-Guided Bone Fracture Surgery:
Concept and Implementation},
booktitle = {Computer Assisted Radiology and Surgery},
pages = {710--715},
year = 1998,
editor = {H. U. Lemke and others}
}
-
[T] "Fluoroscopic X-ray Image Processing and Registration for Computer-Aided
Orthopedic Surgery", M.Sc thesis, Z. Yaniv, 1998
[pdf,
Bibref].
@MastersThesis{yaniv98,
author = {Ziv R. Yaniv},
title = {Fluoroscopic {X-ray} Image Processing and Registration for
Computer-Aided Orthopedic Surgery},
school = {Institue of Computer Science, The Hebrew University of
Jerusalem},
year = 1998
}
-
[C] "Fluoroscopic Image Processing for Computer-Aided Orthopaedic Surgery",
Z. Yaniv, L. Joskowicz, A. Simkin, M. Garza-Jinich, C. Milgrom,
Proc. of the 1st Int. Conf. on Medical Computing and Computer-Assisted
Intervention, 1998
[pdf,
Bibref].
@InProceedings{yaniv-miccai98,
author = {Ziv Yaniv and Leo Joskowicz and Ariel Simkin and
Maria Garza-Jinich and Charles Milgrom},
title = {Fluoroscopic Image Processing for
Computer-Aided Orthopaedic Surgery},
booktitle = {Medical Image Computing and Computer
Assisted Intervention},
pages = {325--334},
year = 1998
}
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